PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001303G0110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family M-type_MADS
Protein Properties Length: 132aa    MW: 14928 Da    PI: 10.5553
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001303G0110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871.1e-274291251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqv fskRr g++KKA+ELSvLCdaeva+++fs+ g+lye++s
  PH01001303G0110 42 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAEVALVVFSPAGRLYEFAS 91
                     8***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-343392IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.5013393IPR002100Transcription factor, MADS-box
CDDcd002652.46E-3535103No hitNo description
PRINTSPR004044.3E-293555IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-3035113IPR002100Transcription factor, MADS-box
PfamPF003193.4E-274289IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-295570IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-297091IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MEGENVVGRR SVQAAAAGQE GEEGGMTKHK VKRKRGRVEL RRIEDRTSRQ VRFSKRRSGL  60
FKKAYELSVL CDAEVALVVF SPAGRLYEFA SSNSSIEKIF GRYWDIPNTT NHLNIEARDS  120
RVDCKIQVKH M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-1935103369Myocyte-specific enhancer factor 2B
1tqe_Q6e-1935103369Myocyte-specific enhancer factor 2B
1tqe_R6e-1935103369Myocyte-specific enhancer factor 2B
1tqe_S6e-1935103369Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12736KHKVKRKRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445812.12e-54hypothetical protein SORBIDRAFT_07g026180
SwissprotP0C5B29e-30MAD56_ORYSJ; MADS-box transcription factor 56
TrEMBLA0A0E0LX991e-54A0A0E0LX99_ORYPU; Uncharacterized protein
STRINGSi015525m7e-54(Setaria italica)
STRINGSb07g026180.17e-54(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.13e-29AGAMOUS-like 14